Learning Objective: By the end of this topic, medical students should be able to differentiate between MHC class I and class II molecules, including their structure, expression, function, and antigen processing mechanisms, and apply this understanding to clinical immunology scenarios on the USMLE Step 1.
The Major Histocompatibility Complex (MHC) is a set of genes located on chromosome 6 that encode cell surface glycoproteins responsible for antigen presentation to T cells.
In humans, these genes are referred to as Human Leukocyte Antigen (HLA) genes.
MHC Class I vs. Class II: Key Comparison Table
| Feature | MHC Class I | MHC Class II |
|---|---|---|
| Loci | HLA-A, HLA-B, HLA-C (→ 1 letter) | HLA-DP, HLA-DQ, HLA-DR (→ 2 letters) |
| Structure | 1 long (α) chain + 1 short (β₂-microglobulin) chain | 2 equal-length chains (α and β) |
| Expression | All nucleated cells, platelets (❌ RBCs) | Antigen-presenting cells (APCs) only — dendritic cells, macrophages, B cells |
| Antigen Source | Endogenous antigens (e.g., viral or cytosolic proteins) | Exogenous antigens (e.g., bacterial proteins) |
| Presented To | CD8⁺ cytotoxic T cells | CD4⁺ helper T cells |
| Mnemonic | CD8 × MHC I = 8 | CD4 × MHC II = 8 |
| Antigen Loading Site | Rough ER, after delivery via TAP (Transporter associated with Antigen Processing) | Acidified endosome, following release of invariant chain |
| Associated Protein | β₂-microglobulin | Invariant chain |
Mechanism of Antigen Presentation
MHC Class I Pathway (Endogenous)
- Viral or cytosolic proteins → degraded in proteasome
- Peptides transported via TAP into RER
- Loaded onto MHC I → presented on cell surface
- Recognized by CD8⁺ cytotoxic T cells
MHC Class II Pathway (Exogenous)
- Extracellular proteins → phagocytosed by APCs
- Fusion with lysosome → peptide fragments
- MHC II with invariant chain moves to endosome
- Invariant chain removed, peptide loaded
- Presented to CD4⁺ helper T cells
Key Points for USMLE Step 1
- Only nucleated cells express MHC I — RBCs do not.
- MHC II is restricted to APCs.
- CD8 → cytotoxic, CD4 → helper mnemonic helps link MHC type to T-cell type.
- β₂-microglobulin is important for MHC I stability (mutations → immunodeficiency).
- Invariant chain prevents premature peptide loading on MHC II in the ER.
Clinical Correlations
| Condition | Mechanism / Link to MHC |
|---|---|
| Bare lymphocyte syndrome type I | ↓ MHC I expression → defective CD8⁺ response |
| Bare lymphocyte syndrome type II | ↓ MHC II expression → defective CD4⁺ response |
| Autoimmune diseases | Linked to specific HLA alleles (e.g., HLA-B27 → ankylosing spondylitis) |









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